Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs34979715 chr3:53048960 G/A 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs34985645 chr8:50128900 T/A 2.31E-10 119 46.27 50.1 25.83 KM Plot
THYM rs34998911 chr12:58339809 C/T 1.21E-12 116 42.73 25.6 6 KM Plot
THYM rs35031105 chr15:78772806 C/T 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs35041014 chr8:50170032 CA/C 3.26E-10 117 46.27 51.53 25.83 KM Plot
THYM rs35076015 chr3:53026366 C/T 0.000205 118 42.73 23.8 25.63 KM Plot
THYM rs35112502 chr21:44081292 C/T 0.000109 117 41.22 40.23 28.43 KM Plot
THYM rs35136937 chr8:50081429 A/G 2.97E-10 117 48.33 49.75 25.83 KM Plot
THYM rs35174175 chr3:53041509 T/C 0.000172 119 42.82 23.8 25.63 KM Plot
THYM rs35189635 chr21:45582228 C/T 0.000116 118 38.58 51.23 28.43 KM Plot
THYM rs35191920 chr8:50091295 A/T 4.63E-10 117 46.27 50.1 25.83 KM Plot
THYM rs35230793 chr3:52897236 G/A 0.000181 118 42.9 23.8 25.63 KM Plot
THYM rs35232475 chr8:50131657 C/T 6.67E-11 118 46.43 49.75 24.87 KM Plot
THYM rs35265707 chr11:11852752 C/A 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs35325945 chr1:227383405 T/TATA 0.000123 119 19.63 37.13 42.82 KM Plot